Wednesday, October 1, 2025
HomeHealth RisksGut Check: What Glyphosate Is Doing to Your Microbiome

Gut Check: What Glyphosate Is Doing to Your Microbiome

You don’t need a medical degree to know when something’s off in your gut.

Bloating. Fatigue. Brain fog. Skin flare-ups. Digestive weirdness that’s hard to explain, harder to treat, and often dismissed as “just stress.”

But what if part of the problem is something we’re told is perfectly safe — something sprayed on the very food we eat?

We’re talking about glyphosate. The active ingredient in Roundup. The chemical that’s been quietly disrupting not just weeds, but the trillions of microbes that keep our bodies running.

Wait — isn’t glyphosate only toxic to plants?

That’s what regulators say — but the science tells a different story. Glyphosate kills plants by targeting the shikimate pathway — a metabolic process found in plants and many bacteria. Human cells don’t use this pathway, which is why regulators once assumed it was harmless.

But here’s the catch: your gut microbiome does use it — and disrupting those microbes can disrupt everything else.

And when you mess with your microbes, you mess with… everything.

The microbiome: your body’s unsung hero

Inside your gut live trillions of bacteria, viruses, and fungi — many of them essential to human health. They’re not just there to break down food. They’re part of a complex system that supports:

  • Immune function
  • Nutrient absorption
  • Mood regulation
  • Inflammation control
  • Hormone balance
  • Detoxification pathways

When glyphosate enters your system — through food or water — it doesn’t just pass through harmlessly. It can throw this entire ecosystem into chaos.

What the research shows

Independent studies — the kind not funded by agrochemical giants — have found that glyphosate:

  • Reduces beneficial gut bacteria like Lactobacillus and Bifidobacterium
  • Allows opportunistic pathogens like Clostridium to take over
  • Increases intestinal permeability (a.k.a. “leaky gut”)
  • Interferes with enzyme activity and detoxification
  • May play a role in metabolic disorders, autoimmune conditions, and even mood dysregulation

This isn’t theoretical. Traces of glyphosate have been found in:

  • Breast milk (detected in some independent studies, though findings remain under debate)
  • Urine samples
  • Umbilical cord blood
  • Popular cereals and plant-based foods

And still, the official line is: “It’s safe.”

But safe for who? And based on what?

Most of the studies regulators rely on are short-term, limited in scope, and not designed to detect subtle shifts in microbial diversity. They don’t test what happens when a child eats trace amounts every day for 15 years. Or what happens when glyphosate interacts with other chemicals in the body. Or how it affects someone with an already-compromised microbiome.

They certainly don’t account for the fact that the gut is the gateway to the rest of your health — physical, mental, and emotional.

This isn’t fringe science anymore

In 2021, researchers warned that glyphosate could initiate a cascade of effects within the gut — impairing detox processes, disrupting hormone signals, and altering immune responses. Animal studies have linked glyphosate exposure to behavioral changes, gut inflammation, and reproductive issues.

And yet, here in New Zealand, the government is considering increasing the amount of glyphosate allowed to remain on our food.

The real question isn’t “Is glyphosate safe?”

It’s “Why are we still pretending this doesn’t matter?”

Because it’s not just about plants. It’s about people.
It’s about the invisible but essential network of microbes that keep you alive.
And it’s about a regulatory system that seems more concerned with protecting profit than public health.

Your gut deserves better. So does your food.

We oppose MPI’s proposal to raise glyphosate residue limits on food crops. If you care about your health, your gut, or your children’s future — now’s the time to say so.

Sign the petition.
Make a submission.
And start asking questions no one else is.

“It’s not just about plants. It’s about people”

– No More Glyphosate NZ

Resources and References

Still not convinced? Or maybe you are — and want to go deeper.
Either way, we’ve gathered a few key resources that show just how far the rabbit hole goes when it comes to glyphosate and gut health. These aren’t fringe studies — they’re peer-reviewed, independently conducted, and largely ignored by the regulators calling the shots.

Potential role of the intestinal microbiota in the toxicity of glyphosate
Environmental Pollution (2022)
A review examining how glyphosate influences microbial balance and contributes to disease.
Read the article: https://doi.org/10.1016/j.envpol.2022.119847

Does Glyphosate Affect the Human Microbiota?
International Journal of Environmental Research and Public Health (2022)
This study explores glyphosate’s potential impact on human gut microbiota and its broader health implications.
Read the article: https://pmc.ncbi.nlm.nih.gov/articles/PMC9145961/

Glyphosate and its formulations Roundup Bioflow and RangerPro alter the caecum microbiome composition in rats
Frontiers in Microbiology (2022)
Research indicating that glyphosate and its commercial formulations can cause significant changes in gut microbiome composition.
Read the study: https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2022.888853/full

Impact of glyphosate (Roundup™) on the composition and functionality of the gut microbiome
Scientific Reports (2021)
An investigation into how glyphosate exposure affects the gut microbiome’s structure and function.
Read the article: https://www.nature.com/articles/s41598-021-82552-2

The science is out there — and it doesn’t support Bayer’s narrative.
Dig in, follow the threads, and decide for yourself whether this is really about weed control… or something much bigger.


Image Source & Attribution

Feature image licensed via Depositphotos. Credit to magicmine for the original work. Explore their full portfolio on depositphotos.com.

No More Glyphosate NZ
No More Glyphosate NZ
No More Glyphosate NZ is a grassroots campaign dedicated to raising awareness about the health and environmental risks of glyphosate use in New Zealand. Our mission is to empower communities to take action, advocate for safer alternatives, and challenge policies that put public safety at risk. Join us in the fight to stop the chemical creep!
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